Publications 2017

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Giberti, S.; Bertazzini, M.; Liboni, M.; Berlicki, Ł.; Kafarski, P.; Forlani, G., Phytotoxicity of aminobisphosphonates targeting both δ1-pyrroline-5-carboxylate reductase and glutamine synthetase Pest Manag. Sci. 2017, 72, 435.

Rydzewska, A.; Olender, A.; Mucha, A.; Kafarski, P., Diethyl boronobenzylphosphonates as substrates in Petasis reactions ARKIVOC 2017, 2017, 107.

Strub, D.J., Garboś, A., Lochyński, S., Synthesis, lipase catalyzed kinetic resolution, and determination of the absolute configuration of enantiomers of the Morita-Baylis-Hillman adduct 3-hydroxy-2-methylenebutanenitrile ARKIVOC 2017, 313.

Talma, M.; Mucha, A., P-C bond formation in reactions of Morita-Baylis-Hillman adducts with phosphorus nucleophiles. Arkivoc 2017, 2017, 324.

Teixeira PF, Kmiec B, Branca RM, Murcha MW, Byzia A, Ivanova A, Whelan J, Drag M, Lehtiö J, Glaser E., A multi-step peptidolytic cascade for amino acid recovery in chloroplasts. Nature Chemical Biology 2017, 13, 15.

Balogh B, Dahmen M, Stahl M, Poreba M, Gersch M, Drag M, Sieber SA , Insights into ClpXP proteolysis: heterooligomerization and partial deactivation enhance chaperone affinity and substrate turnover in Listeria monocytogenes Chemical Science 2017, 8, 1592.

Rut W, Zhang L, Kasperkiewicz P, Poreba M, Hilgenfeld R, Drag M, Extended substrate specificity and first potent irreversible inhibitor/activity-based probe design for Zika virus NS2B-NS3 protease Antiviral Research 2017, 139, 88.

Kasperkiewicz P, Poreba M, Groborz K, Drag M, Emerging challenges in the design of selective protease substrates, inhibitors and activity-based probes for indistinguishable proteases FEBS Journal 2017, 284, 1518.

Drag-Zalesinska M, Drag M, Poreba M, Borska S, Kulbacka J, Saczko J, Anticancer properties of ester derivatives of betulin in human metastatic melanoma cells (Me-45) Cancer Cell International 2017, 17, 7.

Szefczyk, M.; Węglarz-Tomczak, E.; Fortuna, P.; Krzysztoń, A.; Rudzińska-Szostak, E.; Berlicki, Ł., Controlling the Helix Handedness of ααβ-Peptide Foldamers through Sequence Shifting Angew. Chem. Int. Ed. 2017, 56, 2087.

Macegoniuk, K.; Kowalczyk, R.; Rudzińska, A.; Psurski, M.; Wietrzyk, J.; Berlicki, Ł., Potent covalent inhibitors of bacterial urease identified by activity-reactivity profiling Bioorg. Med. Chem. Lett. 2017, 27, 1346.

Poreba M, Szalek A, Rut W, Kasperkiewicz P, Rutkowska-Wlodarczyk I, Snipas SJ, Itoh Y, Turk D, Turk B, Overall CM, Kaczmarek L, Salvesen GS, Drag M, Highly sensitive and adaptable fluorescence-quenched pair discloses the substrate specificity profiles in diverse protease families Scientific Reports 2017, 7, 43135.

Miszczyk, P.; Turowska-Tyrk, I.; Kafarski, P.; Chmielewska, E., Three-Component Reaction of Benzylamines, Diethyl Phosphite and Triethyl Orthoformate: Dependence of the Reaction Course on the Structural Features of the Substrates and Reaction Conditions Molecules 2017, 22, 1.

Miszczyk, P.; Wieczorek, D.; Gałęzowska, J.; Dziuk, B.; Wietrzyk, J.; Chmielewska, E., Reaction of 3-Amino-1,2,4-Triazole with Diethyl Phosphite and Triethyl Orthoformate: Acid-Base Properties and Antiosteoporotic Activities of the Products Molecules 2017, 22, 1.

Ntatsopoulos, V.; Vassiliou, S.; Macegoniuk, K.; Berlicki, Ł.; Mucha, A., Novel organophosphorus scaffolds of urease inhibitors obtained by substitution of Morita-Baylis-Hillman adducts with phosphorus nucleophiles Eur. J. Med. Chem. 2017, 133, 107.

Ząbek A, Junka A, Szymczyk P, Wojtowicz W, Klimek-Ochab M, Młynarz P, Metabolomics analysis of fungal biofilm development and of arachidonic acid-based quorum sensing mechanism Journal of Basic Microbiology 2017, 9999, 1.

Drzyzga, D.; Forlani, G.; Vermander, J.; Kafarski, P.; Lipok, J., Biodegradation of the aminopolyphosphonate DTPMP by the cyanobacterium Anabaena variabilis proceeds via a C–P lyase-independent pathway Environm. Microbiol. 2017, 19, 1065.

Górak Monika, Żymańczyk-Duda Ewa, Reductive activity of free and immobilized cells of cyanobacteria toward oxophosphonates - comparative study. Journal of Applied Phycology 2017, 29, 245.

Żymańczyk-Duda Ewa, Microbial bioconversions of biologically active P-C compounds: scope and limitations of scaling-up. Journal of Biotechnology and Biomaterials 2017, 7, 49.

Kmiecik Natalia, Żymańczyk-Duda Ewa, Enantio convergent biotransformation of O,O-dimethyl-4-oxoazetidin-2-ylphosphonate using fungal cells of Penicillium minioluteum and purified enzymes. Bioorganic Chemistry 2017, 71, 81.

Ewa Żymańczyk-Duda, Małgorzata Brzezińska-Rodak, Magdalena Klimek-Ochab, Maciej Duda, Biochemistry - Knowledge to Practical Applications - Examples Biochemstry ISBN: 978-0-9971499-2-0 2017, 1.

M. Makowski, M. Jewgiński, J. Hurek, A. Poliwoda, P. Kafarski, Kinetics of photochemical isomerization of TFA-Gly-ZΔPhe into TFA-Gly-EΔPhe ARKIVOC 2017, 4, 88.

Bereska, A.; P. Kafarski, P.; Bereska, B.; Tkacz, B.; Iłowska, J.; Lenza, J., The application of organophosphorus flame-retardants in epoxy resin J. Vinyl. Addit. Technol. 2017, 21, 142.

Poreba M, Salvesen GS, Return of the Ice Age: Caspases Safeguard against Inflammatory Cell Death Cell Chemical Biology 2017, 24, 550.

Lunde NN, Haugen MH, Bodin Larsen KB, Damgaard I, Pettersen SJ, Kasem R, Rut W, Drag M, Poreba M, Johansen HT, Solberg R, Glycosylation is important for legumain localization and processing to active forms but not for cystatin E/M inhibitory functions Biochimie 2017, 139, 27.

Kuśnierz, A.; Chmielewska E,, Synthesis of fluorescent aminophosphonates by green chemistry proced Phosphorus, Sulfur, Silicon Relat. Elements 2017, 192, 700.

Lenartowicz, P., Dziuk, B.; Zarychta, B.; Makowski, M.; Kafarski P., Michael additions to double bonds of esters of N-protected (s)-phenylalanyldehydroalanine (X-(s)-Phe-ΔAla-OMe) and its phosphonic acid counterpart (X-(s)-Phe-ΔAla-PO(OEt)2) Phosphorus, Sulfur, Silicon Relat. Elements 2017, 192, 706.

Rydzewska, A.; Mangold, A,; Wanat, W.; Kafarski, P., Diethyl boronobenzylphosphonates as substrates in Suzuki–Miyaura reaction Phosphorus, Sulfur, Silicon Relat. Elements 2017, 192, 758.

Lenartowicz, P.; Makowski, M.; Oszywa, B.; Haremza, K.; Latajka, R.; Pawełczak, M.; Kafarski, P., Addition of thiols to the double bond of dipeptide C -terminal dehydroalanine as a source of new inhibitors of cathepsin C Biochimie 2017, 139, 46.

Kasperkiewicz P, Altman Y, D'Angelo M, Salvesen GS, Drag M, A toolbox of fluorescent probes for parallel imaging reveals uneven location of serine proteases in neutrophils Journal of the American Chemical Society 2017, 139, 10115.

Jewginski, M., Granier, T., Langlois D’Estaintot, B., Fischer, L., Mackereth, C.D., Huc, I, Self-Assembled Protein-Aromatic Foldamer Complexes with 2:3 and 2:2:1 Stoichiometries Journal of the American Chemical Society 2017, 139, 2928.

Ząbek A, Klimek-Ochab M, Jawień E, Młynarz P, Biodiversity in targeted metabolomics analysis of filamentous fungal pathogens by 1H NMR-based studies World J Microbiol Biotechnol 2017, 33, 132.

Wavhale, R. D.; Martis, E. A. F.; Ambre, P. K.; Wan, B.; Franzblau, S. G.; Iyer, K. R.; Raikuvar, K.; Macegoniuk, K.; Berlicki, Ł.; Nandan, S. R.; Coutinho, E. C., Discovery of new leads against Mycobacterium tuberculosis using scaffold hopping and shape based similarity Bioorg. Med. Chem. 2017, 25, 4835.

Macegoniuk, K.; Grela, E.; Biernat, M.; Psurski, M.; Gościniak, G.; Dziełak, A.; Mucha, A.; Wietrzyk, J.; Berlicki, Ł.; Grabowiecka, A., Aminophosphinates against Helicobacter pylori ureolysis—Biochemical and whole-cell inhibition characteristics PLoS One 2017, 1, 182437.

Rudzińska-Szostak, E.; Berlicki, Ł., Sequence engineering to control the helix handedness of peptide foldamers Chem. Eur. J. 2017, 23, 14980.

Poreba M, Salvesen GS, Drag M, Synthesis of a HyCoSuL peptide substrate library to dissect protease substrate specificity Nature Protocols 2017, 12, 2189.

Magiera-Mularz, K.; Skalniak, L.; Zak, K. M.; Musielak, B.; Rudzinska-Szostak, E.; Berlicki, Ł.; Kocik, J.; Grudnik, P.; Sala, D. Zarganes-Tzitzikas, T.; Shaabani, S.; Dömling, A.; Dubin, G.; Holak, T. A., Bioactive Macrocyclic Inhibitors of the PD-1/PD-L1 Immune Checkpoint Angew. Chem. Int. Ed. 2017, 56, 13732.

Gałęzowska, J.; Czapor-Irzabek, H.; Janicki, R.; Chmielewska, E.; Janek, T., New aspects of coordination chemistry and biological activity of NTMP-related diphosphonates containing a heterocyclic ring New J. Chem. 2017, 41, 10731.

Zielonka A., Klimek-Ochab M., Fungal synthesis of size-defined nanoparticles Advances in Natural Sciences-Nanoscience and Nanotechnology 2017, 8, 1.

Fajfer D., Zielonka A., Klimek-Ochab M., Nanokrzemionka - bioperspektywa i potencjał przemysłowy. Cz. 1. Laboratorium-Przegląd Ogólnopolski 2017, 49.

Zymańczyk-Duda E, Brzezińska-Rodak M, Klimek-Ochab M, Duda M, Zerka A, Yeast as a Versatile Tool in Biotechnology Yeast - Industrial Applications, Prof A.Morata (Ed) InTech 2017, 1.

P. Majewska, Whole-cell biotransformation of diethyl 1-hydroxy-1-phenylmethanephosphonate in a different reaction environment. Phosphorus, Sulfur, and Silicon and the Related Elements 2017, 192, 418.

Jasicka-Misiak, I.; Gruyaert, S.; Poliwoda, A., Kafarski, P., Chemical Profiling of Polyfloral Belgian Honey: Ellagic Acid and Pinocembrin as Antioxidants and Chemical Markers J. Chem. 2017, 2017, 1.

Fajfer, D.; Zielonka, A.; Klimek-Ochab, M., Nanokrzemionka - bioperspektywa i potencjał przemysłowy. Cz. 2. Laboratorium-Przegląd Ogólnopolski 2017, 32.

Górak Monika, Żymańczyk-Duda Ewa, Biokatalityczny sposób otrzymywania (S)-2-hydroksy-2-fenyloetanofosfonianu dietylu Patent 2017, 408430, 1.

Kmiecik Natalia, Majewska Paulina, Kozyra Kinga M, Żymańczyk-Duda Ewa, Bioconversion of aminophosphonates to hydroxyphosphonates via two step redox reactions employing fungi Phosphorus, Sulfur, and Silicon and the Related Elements 2017, 1, 1.

Kmiecik Natalia, Monika Serafin, Tomasz Olszewski, Żymańczyk-Duda Ewa, Rapid enantiodifferentation of chiral organophosphorus compounds by 31P NMR spectroscopy in the presence of α-cyclodextrin as the chiral solvating agent Spectroscopy 2017, 32, 1.

Żymańczyk-Duda Ewa, Brzezińska-Rodak Małgorzata, Klimek-Ochab Magdalena, Duda Maciej, Zerka Agata, Yeast as a versatile tool in biotechnology. Yeast - industrial applications / ed. by Antonio Morata and Iris Loira. Rijeka 2017, 1, 3.

Urbańczyk, M.; Góra, J.; Latajka, R.; Sewald, N., Antifreeze glycopeptides: from structure and activity studies to current approaches in chemical synthesis. Amino Acids 2017, 49, 209.

Małuch I, Levesque C, Kwiatkowska A, Couture F, Ly K, Desjardins R, Neugebauer W, Prahl A, Day R, Positional scanning identifies the molecular determinants of a high affinity multi-Leucine inhibitor for furin and PACE4 Journal of Medicinal Chemistry 2017, 60, 2732.

Swiderska KW, Szlachcic A, Czyrek A, Zakrzewska M, Otlewski J, Site-specific conjugation of fibroblast growth factor 2 (FGF2) based on incorporation of alkyne-reactive unnatural amino acid. Bioorganic & Medicinal Chemistry 2017, 25, 3685.

Krzyscik M; Zakrzewska M; Sørensen V; Sokolowska-Wedzina A; Lobocki M; Swiderska KW; Krowarsch D.; Wiedlocha A.; Otlewski J., Cytotoxic Conjugates of Fibroblast Growth Factor 2 (FGF2) with Monomethyl Auristatin E for Effective Killing of Cells Expressing FGF Receptors ACS Omega 2017, 2, 3792.

Kozioł, A., Mroczko, L., Niewiadomska, M., Lochyński, S., ɣ-Lactones with potential biological activity Pol. J. Natur. Sc., 2017, 32, 495.

Surowiak, A., Lochyński, S.,, Aktywność biologiczna oksymów. W: Na pograniczu chemii i biologii. Wydawnictwo Naukowe UAM, Poznań 2017, 37, 21.

Lopes DM*, Malek N*, Edye M, Jager SB, McMurray S, McMahon SB, Denk F (*equal contribution), Sex differences in peripheral not central immune responses to pain-inducing injury Scientific Reports 2017, 7, 16460.

Pajak A, Kostrzewa M, Malek N, Korostynski M, Starowicz K, “Expression of matrix metalloproteinases and components of the endocannabinoid system in the knee joint are associated with biphasic pain progression in a rat model of osteoarthritis Journal of Pain Research 2017, 1973.

Korostyński M, Malek N, Piechota M, Starowicz K, Blood Transcriptional Signatures for Disease Progression in a Rat Model of Osteoarthritis International Journal of Genomics 2017, 1746426.

Galezowska, J. ; Boratynski, P.J.; Kowalczyk, R.; Lipke, K. ; Czapor-Irzabek, H., Copper(II) complexes of chiral 1,2,3-triazole biheterocyclic 'click' ligands equipped in Cinchona alkaloid moiety POLYHEDRON 2017, 121, 1.

Macegoniuk, K.; Kowalczyk, R.; Rudzinska, A.; Psurski, M.; Wietrzyk, J.; Berlicki, L. , Potent covalent inhibitors of bacterial urease identified by activity-reactivity profiling BIOORGANIC & MEDICINAL CHEMISTRY LETTERS 2017, 27, 1346.

Przydacz, A.; Kowalczyk, R.; Albrecht, L. , Bronsted-base-catalyzed remote cascade reactivity of 2,4-dienones - asymmetric synthesis of tetrahydrothiophenes ORGANIC & BIOMOLECULAR CHEMISTRY 2017, 15, 9566.